./configure on alpha ev67 @debian/testing fails


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Questions and Answers : Unix/Linux : ./configure on alpha ev67 @debian/testing fails

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Profile Michael Letzgus
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Joined: 20 May 99
Posts: 5
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Message 3710 - Posted: 3 Jul 2004, 15:55:39 UTC

the configure-script delivered with the seti@home-sourbecode fails (see below) on my Alpha EV67 running Debian/testing @Kernel 2.6.7.

Compiling the BOINC core-client works fine after adding the alpha ev67 to the configure system.




chep117:~/prg/boinc/seti_boinc# ./configure
checking build system type... alphaev67-unknown-linux-gnu
checking host system type... alphaev67-unknown-linux-gnu
checking for g++... g++
checking for C++ compiler default output... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for gawk... no
checking for mawk... mawk
checking for ranlib... ranlib
checking for sed... /bin/sed
checking for tr... /usr/bin/tr
checking for ar... /usr/bin/ar
checking for autoconf... no
checking for autoheader... no
checking for astyle... no
checking for indent... no
checking for sort... /usr/bin/sort
checking for uniq... /usr/bin/uniq
checking for cat... /bin/cat
checking for mv... /bin/mv
checking for rm... /bin/rm
checking whether make sets $(MAKE)... yes
checking shared object extension... so
checking library extension... a
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGE_FILES value needed for large files... no
checking for shmget in -lcygipc... no
checking for aio_fork in -laio... no
checking for dlclose in -ldl... yes
checking for elf_hash in -lelf... no
checking for fftw_create_plan in -lfftw... no
checking for sin in -lm... yes
checking for gethostbyname in -lnsl... yes
checking for bind in -lsocket... no
checking for uncompress in -lz... yes
checking for main in -lstdc++... yes
checking for XCreateGC in -lX11... no
checking for XawTextReplace in -lXaw... no
checking for XShmGetImage in -lXext... no
checking for XmuMakeAtom in -lXmu... no
checking for XtDisplay in -lXt... no
checking for IceProtocolVersion in -lICE... no
checking for SmsInitialize in -lSM... no
checking for glCallList in -lGL... no
checking for main in -lGLU... no
checking for main in -lGLUT... no
checking for head... /usr/bin/head
checking for find... /usr/bin/find
checking for BOINC... not found
checking for RSAPublicEncrypt in -lrsaeuro... no
checking for mysql_config... /usr/bin/mysql_config
yes
checking mysql libraries... -L/usr/lib -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib -lssl -lcrypto
checking mysql includes... -I/usr/include/mysql
checking for Informix... checking for dbaccess... no
no
checking path to S4 library... not found
checking for egrep... grep -E
checking for ANSI C header files... yes
checking whether largefile support breaks C++... no
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking algorithm usability... no
checking algorithm presence... yes
configure: WARNING: algorithm: present but cannot be compiled
configure: WARNING: algorithm: check for missing prerequisite headers?
configure: WARNING: algorithm: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for algorithm... yes
checking bitset usability... no
checking bitset presence... yes
configure: WARNING: bitset: present but cannot be compiled
configure: WARNING: bitset: check for missing prerequisite headers?
configure: WARNING: bitset: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for bitset... yes
checking cassert usability... no
checking cassert presence... yes
configure: WARNING: cassert: present but cannot be compiled
configure: WARNING: cassert: check for missing prerequisite headers?
configure: WARNING: cassert: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for cassert... yes
checking cctype usability... no
checking cctype presence... yes
configure: WARNING: cctype: present but cannot be compiled
configure: WARNING: cctype: check for missing prerequisite headers?
configure: WARNING: cctype: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for cctype... yes
checking cerrno usability... no
checking cerrno presence... yes
configure: WARNING: cerrno: present but cannot be compiled
configure: WARNING: cerrno: check for missing prerequisite headers?
configure: WARNING: cerrno: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for cerrno... yes
checking cfloat usability... no
checking cfloat presence... yes
configure: WARNING: cfloat: present but cannot be compiled
configure: WARNING: cfloat: check for missing prerequisite headers?
configure: WARNING: cfloat: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for cfloat... yes
checking climits usability... no
checking climits presence... yes
configure: WARNING: climits: present but cannot be compiled
configure: WARNING: climits: check for missing prerequisite headers?
configure: WARNING: climits: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for climits... yes
checking clocale usability... no
checking clocale presence... yes
configure: WARNING: clocale: present but cannot be compiled
configure: WARNING: clocale: check for missing prerequisite headers?
configure: WARNING: clocale: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for clocale... yes
checking cmath usability... no
checking cmath presence... yes
configure: WARNING: cmath: present but cannot be compiled
configure: WARNING: cmath: check for missing prerequisite headers?
configure: WARNING: cmath: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for cmath... yes
checking complex usability... no
checking complex presence... yes
configure: WARNING: complex: present but cannot be compiled
configure: WARNING: complex: check for missing prerequisite headers?
configure: WARNING: complex: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for complex... yes
checking csetjmp usability... no
checking csetjmp presence... yes
configure: WARNING: csetjmp: present but cannot be compiled
configure: WARNING: csetjmp: check for missing prerequisite headers?
configure: WARNING: csetjmp: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for csetjmp... yes
checking csignal usability... no
checking csignal presence... yes
configure: WARNING: csignal: present but cannot be compiled
configure: WARNING: csignal: check for missing prerequisite headers?
configure: WARNING: csignal: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for csignal... yes
checking cstdarg usability... no
checking cstdarg presence... yes
configure: WARNING: cstdarg: present but cannot be compiled
configure: WARNING: cstdarg: check for missing prerequisite headers?
configure: WARNING: cstdarg: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for cstdarg... yes
checking cstddef usability... no
checking cstddef presence... yes
configure: WARNING: cstddef: present but cannot be compiled
configure: WARNING: cstddef: check for missing prerequisite headers?
configure: WARNING: cstddef: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for cstddef... yes
checking cstdio usability... no
checking cstdio presence... yes
configure: WARNING: cstdio: present but cannot be compiled
configure: WARNING: cstdio: check for missing prerequisite headers?
configure: WARNING: cstdio: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for cstdio... yes
checking cstdlib usability... no
checking cstdlib presence... yes
configure: WARNING: cstdlib: present but cannot be compiled
configure: WARNING: cstdlib: check for missing prerequisite headers?
configure: WARNING: cstdlib: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for cstdlib... yes
checking cstring usability... no
checking cstring presence... yes
configure: WARNING: cstring: present but cannot be compiled
configure: WARNING: cstring: check for missing prerequisite headers?
configure: WARNING: cstring: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for cstring... yes
checking ctime usability... no
checking ctime presence... yes
configure: WARNING: ctime: present but cannot be compiled
configure: WARNING: ctime: check for missing prerequisite headers?
configure: WARNING: ctime: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for ctime... yes
checking deque usability... no
checking deque presence... yes
configure: WARNING: deque: present but cannot be compiled
configure: WARNING: deque: check for missing prerequisite headers?
configure: WARNING: deque: proceeding with the preprocessor's result
configure: WARNING: ## ------------------------------------ ##
configure: WARNING: ## Report this to bug-autoconf@gnu.org. ##
configure: WARNING: ## ------------------------------------ ##
checking for deque... yes
config.status: creating Makefile
config.status: creating client/Makefile
config.status: creating db/Makefile
config.status: creating db/schema_to_class
config.status: creating config.h
config.status: config.h is unchanged
chep117:~/prg/boinc/seti_boinc# #




chep117:~/prg/boinc/seti_boinc# make
(cd client; make all)
make[1]: Entering directory `/root/prg/boinc/seti_boinc/client'
g++ -g -O2 -DHAVE_CONFIG_H -DTEXT_UI -DNDEBUG -DCLIENT -I.. -I../db -I/api -I/lib -I/image_libs/ -M *.cpp > dependencies
In file included from analyzeFuncs.cpp:23:
../config.h:346:23: std_fixes.h: No such file or directory
analyzeFuncs.cpp:37:18: util.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from s_util.h:107,
from analyzeFuncs.cpp:38:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from analyzeFuncs.cpp:43:
analyzeReport.h:21:23: boinc_api.h: No such file or directory
analyzeReport.h:22:19: mfile.h: No such file or directory
analyzeFuncs.cpp:51:21: filesys.h: No such file or directory
analyzeFuncs.cpp:59:23: boinc_api.h: No such file or directory
In file included from analyzePoT.cpp:20:
../config.h:346:23: std_fixes.h: No such file or directory
analyzePoT.cpp:37:18: util.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from seti.h:22,
from analyzePoT.cpp:40:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from analyzePoT.cpp:44:
analyzeReport.h:21:23: boinc_api.h: No such file or directory
analyzeReport.h:22:19: mfile.h: No such file or directory
analyzePoT.cpp:48:21: filesys.h: No such file or directory
analyzePoT.cpp:49:18: util.h: No such file or directory
analyzePoT.cpp:56:23: boinc_api.h: No such file or directory
In file included from analyzeReport.cpp:21:
../config.h:346:23: std_fixes.h: No such file or directory
analyzeReport.cpp:35:25: diagnostics.h: No such file or directory
analyzeReport.cpp:36:18: util.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from s_util.h:107,
from analyzeReport.cpp:37:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from analyzeReport.cpp:42:
analyzeReport.h:21:23: boinc_api.h: No such file or directory
analyzeReport.h:22:19: mfile.h: No such file or directory
In file included from chirpfft.cpp:18:
../config.h:346:23: std_fixes.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from chirpfft.cpp:30:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
chirpfft.cpp:32:18: util.h: No such file or directory
chirpfft.cpp:33:21: filesys.h: No such file or directory
In file included from fft8g.cpp:90:
../config.h:346:23: std_fixes.h: No such file or directory
In file included from gaussfit.cpp:25:
../config.h:346:23: std_fixes.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from s_util.h:107,
from gaussfit.cpp:48:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from gaussfit.cpp:53:
analyzeReport.h:21:23: boinc_api.h: No such file or directory
analyzeReport.h:22:19: mfile.h: No such file or directory
In file included from gdata.cpp:17:
../config.h:346:23: std_fixes.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from seti.h:22,
from gdata.h:28,
from gdata.cpp:18:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from lcgamm.cpp:20:
../config.h:346:23: std_fixes.h: No such file or directory
lcgamm.cpp:31:25: diagnostics.h: No such file or directory
In file included from main.cpp:28:
../config.h:346:23: std_fixes.h: No such file or directory
main.cpp:42:25: diagnostics.h: No such file or directory
main.cpp:43:18: util.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from s_util.h:107,
from main.cpp:44:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
main.cpp:52:23: boinc_api.h: No such file or directory
main.cpp:53:20: reduce.h: No such file or directory
In file included from malloc_a.cpp:19:
../config.h:346:23: std_fixes.h: No such file or directory
In file included from progress.cpp:19:
../config.h:346:23: std_fixes.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from seti.h:22,
from progress.cpp:34:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from pulsefind.cpp:34:
../config.h:346:23: std_fixes.h: No such file or directory
pulsefind.cpp:49:25: diagnostics.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from pulsefind.cpp:50:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from pulsefind.cpp:52:
analyzeReport.h:21:23: boinc_api.h: No such file or directory
analyzeReport.h:22:19: mfile.h: No such file or directory
pulsefind.cpp:53:18: util.h: No such file or directory
In file included from sah_gfx_base.cpp:17:
../config.h:346:23: std_fixes.h: No such file or directory
sah_gfx_base.cpp:42:19: parse.h: No such file or directory
sah_gfx_base.cpp:43:26: graphics_api.h: No such file or directory
In file included from sah_gfx_base.cpp:44:
sah_gfx_base.h:17:23: boinc_api.h: No such file or directory
sah_gfx_base.h:18:19: gutil.h: No such file or directory
sah_gfx_base.h:19:27: graphics_data.h: No such file or directory
sah_gfx_base.h:21:20: reduce.h: No such file or directory
In file included from sah_gfx.cpp:58:
../config.h:346:23: std_fixes.h: No such file or directory
sah_gfx.cpp:111:18: util.h: No such file or directory
sah_gfx.cpp:112:23: boinc_api.h: No such file or directory
sah_gfx.cpp:113:26: graphics_api.h: No such file or directory
sah_gfx.cpp:114:19: gutil.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from seti.h:22,
from analyzeFuncs.h:20,
from sah_gfx.cpp:115:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from sah_gfx.cpp:116:
sah_gfx.h:21:20: reduce.h: No such file or directory
sah_gfx.h:22:19: gutil.h: No such file or directory
In file included from sah_gfx.h:23,
from sah_gfx.cpp:116:
sah_gfx_base.h:17:23: boinc_api.h: No such file or directory
sah_gfx_base.h:18:19: gutil.h: No such file or directory
sah_gfx_base.h:19:27: graphics_data.h: No such file or directory
sah_gfx_base.h:21:20: reduce.h: No such file or directory
In file included from seti.cpp:34:
../config.h:346:23: std_fixes.h: No such file or directory
seti.cpp:49:25: diagnostics.h: No such file or directory
seti.cpp:50:19: parse.h: No such file or directory
seti.cpp:51:21: filesys.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from s_util.h:107,
from seti.cpp:52:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from seti.cpp:56:
analyzeReport.h:21:23: boinc_api.h: No such file or directory
analyzeReport.h:22:19: mfile.h: No such file or directory
In file included from seti_header.cpp:23:
../config.h:346:23: std_fixes.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from seti.h:22,
from seti_header.cpp:40:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
seti_header.cpp:44:19: parse.h: No such file or directory
In file included from seti_header.cpp:49:
analyzeReport.h:21:23: boinc_api.h: No such file or directory
analyzeReport.h:22:19: mfile.h: No such file or directory
In file included from spike.cpp:18:
../config.h:346:23: std_fixes.h: No such file or directory
spike.cpp:35:18: util.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from s_util.h:107,
from spike.cpp:36:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from spike.cpp:41:
analyzeReport.h:21:23: boinc_api.h: No such file or directory
analyzeReport.h:22:19: mfile.h: No such file or directory
In file included from s_util.cpp:22:
../config.h:346:23: std_fixes.h: No such file or directory
s_util.cpp:50:18: util.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from s_util.h:107,
from s_util.cpp:51:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from timecvt.cpp:27:
../config.h:346:23: std_fixes.h: No such file or directory
timecvt.cpp:44:18: util.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from s_util.h:107,
from timecvt.cpp:45:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from version.cpp:18:
../config.h:346:23: std_fixes.h: No such file or directory
In file included from worker.cpp:20:
../config.h:346:23: std_fixes.h: No such file or directory
In file included from ../db/sqlrow.h:26,
from ../db/db_table.h:25,
from seti_header.h:33,
from s_util.h:107,
from worker.cpp:39:
../db/xml_util.h:66:27: error_numbers.h: No such file or directory
In file included from worker.cpp:45:
analyzeReport.h:21:23: boinc_api.h: No such file or directory
analyzeReport.h:22:19: mfile.h: No such file or directory
worker.cpp:47:21: filesys.h: No such file or directory
worker.cpp:48:23: boinc_api.h: No such file or directory
make[1]: *** [dependencies] Error 1
make[1]: Leaving directory `/root/prg/boinc/seti_boinc/client'
make: *** [all] Error 2
chep117:~/prg/boinc/seti_boinc#

Dr. Jones
Send message
Joined: 24 Oct 00
Posts: 8
Credit: 3,865,825
RAC: 3,725
Germany
Message 5735 - Posted: 9 Jul 2004, 18:48:38 UTC

This is a post of the betatest forum postet by Thomas Horsten
with some modifications from me

To compile seti_boinc do the following:

1. Download the latest source for boinc client and seti_boinc.

2. Unpack the sources in the same top level directory (boinc_src for this example).

3. In boinc_src/boinc, do "./configure && make" and then copy the resulting client (will be in client directory) to whereever you run boinc from.

4. Do the configure in seti_boinc: ./configure

5. Now build the client: make

6. Run the client
You can now either copy the client to wherever boinc is installed (you have to create the app_info.xml in the projects directory as directed on this page: http://boinc.berkeley.edu/anonymous_platform.php). Or you can just run it from the client dir in standalone mode: copy test_workunits/reference_work_unit.sah to work_unit.sah in client, and run "./setiathome-2.xx.i686-pc-linux-gnu -standalone"

If you get the following error:
analyzeReport.cpp: In function `int ReportPulseEvent(float, float, float, int,
int, float, float, float*, int)':
analyzeReport.cpp:337: error: `assert' undeclared (first use this function)
analyzeReport.cpp:337: error: (Each undeclared identifier is reported only once
for each function it appears in.)
make[1]: *** [analyzeReport.o] Error 1
make[1]: Leaving directory `/usr/local/src/seti_boinc/client'
make: *** [all] Error 2

you must edit the following in line 91 in boinc/lib/diagnostics.h

#ifndef BOINCASSERT
#define BOINCASSERT assert
#endif

to:

#ifndef BOINCASSERT
#define BOINCASSERT(expr) ((void)0)
#endif


Questions and Answers : Unix/Linux : ./configure on alpha ev67 @debian/testing fails

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