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I'm a bit late to respond, but I bought the same computer (ASUS G51VX) three weeks ago and I've been running SETI@Home with no problems (except with SETI Beta's 6.09 CUDA application, but that's beta).
ASUS downclocks the GPU to 500/1250/900 MHz (core/shaders/memory) from NVIDIA's reference clocks of 550/1375/950 MHz, and this takes care of the temperature issue, mostly.
For example, at ASUS clocks with the SETI@Home CUDA 6.08 application running, my GPU temperatures average ~81C with a maximum of 86C.
At NVIDIA clocks, the temperature goes to 83C average, 87C maximum.
Compared to playing a game (Borderlands - fantastic game, by the way), the temperature goes up to 91C during Borderlands at 550/1375/900 MHz.
So somewhat surprisingly, SETI@Home CUDA uses less GPU processing power than most games (in fact, Crysis makes GPU temperature go to 93C).
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